PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID gw1.19.139.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; prasinophytes; Mamiellophyceae; Mamiellales; Bathycoccaceae; Ostreococcus
Family HSF
Protein Properties Length: 169aa    MW: 19475.8 Da    PI: 8.9691
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gw1.19.139.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind86.43.9e-271905103
                   HHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXXXXXXX CS
  HSF_DNA-bind   5 klyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellekikrkk 101
                   k+++++ d++++++i w+++g++f v++++ ++++ Lpk FkhsnfaSF+RQLn YgF+k +++           eF  + F++gk ell+++kr+ 
  gw1.19.139.1   1 KTWNMVTDDSNDDVIAWNAKGKTFTVYKPDVLEEEYLPKAFKHSNFASFLRQLNNYGFRKCHSDA---------YEFGVQGFERGKPELLTTLKRHD 88 
                   89***********************************************************9998.........78*******************98 PP

                   XX CS
  HSF_DNA-bind 102 se 103
                   s+
  gw1.19.139.1  89 ST 90 
                   76 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004151.7E-26187IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene3DG3DSA:1.10.10.105.7E-27181IPR011991Winged helix-turn-helix DNA-binding domain
SuperFamilySSF467854.15E-24186IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF004471.9E-24186IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000564.1E-73648IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000564.1E-74961IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009408Biological Processresponse to heat
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 169 aa     Download sequence    Send to blast
KTWNMVTDDS NDDVIAWNAK GKTFTVYKPD VLEEEYLPKA FKHSNFASFL RQLNNYGFRK  60
CHSDAYEFGV QGFERGKPEL LTTLKRHDST KGRKGAPRKK TAGGGGGDEL GAYGGIENEV  120
EQLKRDRLLL LKEVMRLRDT QSEQRDRVEE LSNRLEATEN FQTQMRHFV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ldu_A3e-1718623119Heat shock factor protein 1
5d5u_B3e-1718632128Heat shock factor protein 1
5d5v_B3e-1718632128Heat shock factor protein 1
5d5v_D3e-1718632128Heat shock factor protein 1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_001422409.12e-71predicted protein, partial
TrEMBLA0A096PA507e-78A0A096PA50_
STRINGA4SAB86e-71(Ostreococcus lucimarinus CCE9901)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
ChlorophytaeOGCP5221523
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G32330.11e-33heat shock transcription factor A1D